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Practical Protein Bioinformatics by Mónica Chagoyen and Florencio Pazos (2016, Trade Paperback)

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Practical Protein Bioinformatics by Florencio Pazos, Mónica Chagoyen. Author Florencio Pazos, Mónica Chagoyen. Title Practical Protein Bioinformatics. Format Paperback.

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Product Information

INTRODUCTION 1. SEQUENCES - INTRODUCTION - REPRESENTING PROTEIN SEQUENCES IN THE COMPUTER Sequence file formats Sequence format conversion tools MAIN PROTEIN SEQUENCE DATABASES BASIC SEQUENCE-BASED CHARACTERISTICS COMPARE TWO PROTEIN SEQUENCES Types of pair-wise sequence alignments FINDING SIMILAR SEQUENCES IN A DATABASE (BASIC) Which sequence database to search? BLAST COMPARE MORE THAN TWO SEQUENCES Multiple Sequence Alignments: Formats and Conversion Alignment editing and representation Summarizing MSAs FINDING SIMILAR SEQUENCES IN A DATABASE (ADVANCED) Sequence profiles Iterative profile construction HMM profile search against a sequence database HMM profile search against a profile database PROTEIN MOTIFS, DOMAINS AND FAMILIES BASIC PHYLOGENY 2. STRUCTURES INTRODUCTION Storing protein structures - The PDB file format MAIN PROTEIN STRUCTURE DATABASES Classifications of structural domains STRUCTURE MANIPULATION, VISUALIZATION AND COMPARISON Structure Manipulation and Visualization Structure Comparison PREDICTION OF 1D STRUCTURAL FEATURES Secondary structure and solvent accessibility Transmembrane segments Coiled-coils Disordered regions Protein sorting signals PREDICTING PROTEIN 3D STRUCTURE Template-based (homology-based approaches) Template-based (fragment-based approaches) Model quality checks ANALYSIS OF PROTEIN STRUCTURE Mapping conservation Protein and ligand contacts Surface clefts, binding pockets, tunnels and internal cavities 3. SYSTEMS INTRODUCTION Protein/gene functional annotations ID conversions ANNOTATION ENRICHMENT ANALYSIS OF LARGE PROTEINS SETS PROTEIN INTERACTION NETWORKS METABOLIC NETWORKS Retrieve the metabolic-related information associated to a protein of interest Map a large set of proteins in the metabolome OTHER BIOLOGICAL NETWORKS BIBLIOGRAPHY HOW TO TOOLS INDEX

Product Identifiers

Publisher
Springer International Publishing A&G
ISBN-10
3319381849
ISBN-13
9783319381848
eBay Product ID (ePID)
239746357

Product Key Features

Book Title
Practical Protein Bioinformatics
Author
Mónica Chagoyen, Florencio Pazos
Format
Trade Paperback
Language
English
Topic
Life Sciences / Biochemistry, General, Chemistry / Organic
Publication Year
2016
Genre
Science, Medical
Number of Pages
VIII, 106 Pages

Dimensions

Item Length
9.2in
Item Height
0.2in
Item Width
6.1in
Item Weight
66.4 Oz

Additional Product Features

Number of Volumes
1 Vol.
Lc Classification Number
Qd431-431.7
Table of Content
INTRODUCTION 1. SEQUENCES - INTRODUCTION - REPRESENTING PROTEIN SEQUENCES IN THE COMPUTER Sequence file formats Sequence format conversion tools MAIN PROTEIN SEQUENCE DATABASES BASIC SEQUENCE-BASED CHARACTERISTICS COMPARE TWO PROTEIN SEQUENCES Types of pair-wise sequence alignments FINDING SIMILAR SEQUENCES IN A DATABASE (BASIC) Which sequence database to search? BLAST COMPARE MORE THAN TWO SEQUENCES Multiple Sequence Alignments: Formats and Conversion Alignment editing and representation Summarizing MSAs FINDING SIMILAR SEQUENCES IN A DATABASE (ADVANCED) Sequence profiles Iterative profile construction HMM profile search against a sequence database HMM profile search against a profile database PROTEIN MOTIFS, DOMAINS AND FAMILIES BASIC PHYLOGENY 2. STRUCTURES INTRODUCTION Storing protein structures - The PDB file format MAIN PROTEIN STRUCTURE DATABASES Classifications of structural domains STRUCTURE MANIPULATION, VISUALIZATION AND COMPARISON Structure Manipulation and Visualization Structure Comparison PREDICTION OF 1D STRUCTURAL FEATURES Secondary structure and solvent accessibility Transmembrane segments Coiled-coils Disordered regions Protein sorting signals PREDICTING PROTEIN 3D STRUCTURE Template-based (homology-based approaches) Template-based (fragment-based approaches) Model quality checks ANALYSIS OF PROTEIN STRUCTURE Mapping conservation Protein and ligand contacts Surface clefts, binding pockets, tunnels and internal cavities 3. SYSTEMS INTRODUCTION Protein/gene functional annotations ID conversions ANNOTATION ENRICHMENT ANALYSIS OF LARGE PROTEINS SETS PROTEIN INTERACTION NETWORKS METABOLIC NETWORKS Retrieve the metabolic-related information associated to a protein of interest Map a large set of proteins in the metabolome OTHER BIOLOGICAL NETWORKS BIBLIOGRAPHY HOW TO TOOLS INDEX
Copyright Date
2015
Target Audience
Trade
Illustrated
Yes

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Picture 1 of 1

Practical Protein Bioinformatics by Mónica Chagoyen and Florencio Pazos (2016, Trade Paperback)

About this product

Product Information

Product Identifiers

Product Key Features

Dimensions

Additional Product Features

Best Selling in Books

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